IL_8VVT_252

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_252 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.3878

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

8VVT|1|ZA|C|1751
8VVT|1|ZA|C|1752
8VVT|1|ZA|C|1753
*
8VVT|1|ZA|G|1780
8VVT|1|ZA|A|1781
8VVT|1|ZA|G|1782

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

S6