IL_8VVU_002

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_002 not in the Motif Atlas

Geometric match to IL_5DO5_003

Geometric discrepancy: 0.1976

The information below is about IL_5DO5_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8VVU|1|SA|U|11
8VVU|1|SA|G|12
8VVU|1|SA|U|13
*
8VVU|1|SA|A|22
8VVU|1|SA|G|23
8VVU|1|SA|A|24

Current chains

Chain SA

P-site tRNA

Nearby chains

Chain WA

Large subunit ribosomal RNA; LSU rRNA