IL_8VVU_005
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_005 not in the Motif Atlas
- Geometric match to IL_1Y27_001
- Geometric discrepancy: 0.1267
- The information below is about IL_1Y27_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8VVU|1|WA|G|16
8VVU|1|WA|A|17
8VVU|1|WA|C|18
*
8VVU|1|YA|G|139
8VVU|1|YA|C|140
8VVU|1|YA|C|141
Current chains
- Chain WA
- 28S rRNA
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain GA
- L35
- Chain IA
- L37
- Chain M
- L15
- Chain W
- uL23
Coloring options: