IL_8VVU_009

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8VVU|1|WA|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_009 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.3097

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVU|1|WA|C|118
8VVU|1|WA|G|119
8VVU|1|WA|A|120
8VVU|1|WA|A|121
*
8VVU|1|WA|U|152
8VVU|1|WA|G|153

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain GA

L35

Chain M

L15