IL_8VVU_022
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8VVU|1|WA|G|409, 8VVU|1|WA|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_022 not in the Motif Atlas
- Geometric match to IL_8CRE_015
- Geometric discrepancy: 0.1497
- The information below is about IL_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8VVU|1|WA|G|387
8VVU|1|WA|A|388
8VVU|1|WA|A|389
8VVU|1|WA|C|390
*
8VVU|1|WA|G|401
8VVU|1|WA|A|402
8VVU|1|WA|G|403
8VVU|1|WA|U|404
8VVU|1|WA|U|405
8VVU|1|WA|C|406
8VVU|1|WA|A|407
8VVU|1|WA|A|408
8VVU|1|WA|G|409
8VVU|1|WA|A|410
8VVU|1|WA|G|411
8VVU|1|WA|G|412
8VVU|1|WA|G|413
8VVU|1|WA|C|414
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain KA
- eL39
- Chain O
- uL22
- Chain X
- L26
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: