IL_8VVU_024

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8VVU|1|WA|A|1305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_024 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.3194

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVU|1|WA|G|443
8VVU|1|WA|G|444
8VVU|1|WA|U|445
8VVU|1|WA|C|446
*
8VVU|1|WA|G|1302
8VVU|1|WA|C|1303
8VVU|1|WA|U|1304
8VVU|1|WA|A|1305
8VVU|1|WA|C|1306

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain EA

eL33

Chain YA

5.8S ribosomal RNA; 5.8S rRNA