IL_8VVU_043

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8VVU|1|WA|C|1220, 8VVU|1|WA|C|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_043 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2836

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

8VVU|1|WA|C|1088
8VVU|1|WA|U|1089
8VVU|1|WA|C|1090
*
8VVU|1|WA|G|1219
8VVU|1|WA|C|1220
8VVU|1|WA|C|1221
8VVU|1|WA|C|1222
8VVU|1|WA|G|1223

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain F

uL30