IL_8VVU_044

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAC*GUCG

Length

7 nucleotides

Bulged bases

8VVU|1|WA|C|1216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_044 not in the Motif Atlas

Geometric match to IL_9D5J_002

Geometric discrepancy: 0.2145

The information below is about IL_9D5J_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8VVU|1|WA|C|1092
8VVU|1|WA|A|1093
8VVU|1|WA|C|1094
*
8VVU|1|WA|G|1214
8VVU|1|WA|U|1215
8VVU|1|WA|C|1216
8VVU|1|WA|G|1217

Current chains

Chain WA

28S rRNA

Nearby chains

Chain F

uL30

Chain S

eL21