IL_8VVU_052

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_052 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3129

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8VVU|1|WA|G|1427
8VVU|1|WA|G|1428
8VVU|1|WA|A|1429
8VVU|1|WA|U|1430
8VVU|1|WA|C|1431
*
8VVU|1|WA|G|1457
8VVU|1|WA|C|1458
8VVU|1|WA|G|1459
8VVU|1|WA|C|1460
8VVU|1|WA|A|1461
8VVU|1|WA|C|1462

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain P

eL18