IL_8VVU_053

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_053 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1935

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8VVU|1|WA|C|1433
8VVU|1|WA|G|1434
8VVU|1|WA|A|1435
8VVU|1|WA|G|1436
*
8VVU|1|WA|C|1452
8VVU|1|WA|G|1453
8VVU|1|WA|A|1454
8VVU|1|WA|G|1455

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain P

eL18