IL_8VVU_083

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8VVU|1|WA|A|1962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_083 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.2913

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VVU|1|WA|U|1959
8VVU|1|WA|A|1960
8VVU|1|WA|U|1961
8VVU|1|WA|A|1962
8VVU|1|WA|G|1963
8VVU|1|WA|A|1964
8VVU|1|WA|C|1965
8VVU|1|WA|A|1966
8VVU|1|WA|G|1967
*
8VVU|1|WA|C|2024
8VVU|1|WA|C|2025
8VVU|1|WA|G|2026
8VVU|1|WA|A|2027
8VVU|1|WA|A|2028

Current chains

Chain WA

28S rRNA

Nearby chains

Chain LA

eL40

Chain b

RPLP0