IL_8VVU_087
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 8VVU|1|WA|G|2345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_087 not in the Motif Atlas
- Geometric match to IL_8CRE_061
- Geometric discrepancy: 0.1105
- The information below is about IL_8CRE_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
8VVU|1|WA|C|2292
8VVU|1|WA|G|2293
8VVU|1|WA|C|2294
*
8VVU|1|WA|G|2344
8VVU|1|WA|G|2345
8VVU|1|WA|U|2346
8VVU|1|WA|G|2347
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain DA
- L32
- Chain PA
- L28
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Z
- L27A
Coloring options: