IL_8VVU_109
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8VVU|1|WA|G|3841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_109 not in the Motif Atlas
- Geometric match to IL_8P9A_305
- Geometric discrepancy: 0.1551
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8VVU|1|WA|G|2849
8VVU|1|WA|G|2850
8VVU|1|WA|A|2851
8VVU|1|WA|A|2852
8VVU|1|WA|G|2853
8VVU|1|WA|U|2854
8VVU|1|WA|C|2855
8VVU|1|WA|G|2856
8VVU|1|WA|G|2857
*
8VVU|1|WA|C|3839
8VVU|1|WA|U|3840
8VVU|1|WA|G|3841
8VVU|1|WA|U|3842
8VVU|1|WA|C|3843
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain U
- L23
Coloring options: