IL_8VVU_112

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_112 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.0963

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8VVU|1|WA|G|2891
8VVU|1|WA|C|2892
8VVU|1|WA|U|2893
*
8VVU|1|WA|A|3612
8VVU|1|WA|A|3613
8VVU|1|WA|C|3614

Current chains

Chain WA

28S rRNA

Nearby chains

Chain IB

S8

Chain Q

eL19

Chain ZA

Small subunit ribosomal RNA; SSU rRNA