IL_8VVU_116

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8VVU|1|WA|C|3703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_116 not in the Motif Atlas

Geometric match to IL_4V9F_066

Geometric discrepancy: 0.1748

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

8VVU|1|WA|C|3702
8VVU|1|WA|C|3703
8VVU|1|WA|A|3704
8VVU|1|WA|G|3705
*
8VVU|1|WA|C|3751
8VVU|1|WA|G|3752

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain ZA

Small subunit ribosomal RNA; SSU rRNA