IL_8VVU_119

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAU*GC

Length

6 nucleotides

Bulged bases

8VVU|1|WA|A|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_119 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.3819

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8VVU|1|WA|G|3712
8VVU|1|WA|A|3713
8VVU|1|WA|A|3714
8VVU|1|WA|U|3715
*
8VVU|1|WA|G|3742
8VVU|1|WA|C|3743

Current chains

Chain WA

28S rRNA

Nearby chains

Chain TA

Transfer RNA; tRNA

Chain ZA

Small subunit ribosomal RNA; SSU rRNA