IL_8VVU_121

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_121 not in the Motif Atlas

Geometric match to IL_8CRE_094

Geometric discrepancy: 0.0862

The information below is about IL_8CRE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8VVU|1|WA|G|3782
8VVU|1|WA|C|3783
*
8VVU|1|WA|G|3813
8VVU|1|WA|C|3814
8VVU|1|WA|A|3815
8VVU|1|WA|U|3816

Current chains

Chain WA

28S rRNA

Nearby chains

Chain MA

eL41

Chain SA

Transfer RNA; tRNA

Chain ZA

Small subunit ribosomal RNA; SSU rRNA