IL_8VVU_131

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_131 not in the Motif Atlas

Geometric match to IL_8CRE_108

Geometric discrepancy: 0.1288

The information below is about IL_8CRE_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8VVU|1|WA|C|4245
8VVU|1|WA|A|4246
8VVU|1|WA|G|4247
*
8VVU|1|WA|C|4265
8VVU|1|WA|G|4266
8VVU|1|WA|U|4267
8VVU|1|WA|G|4268
8VVU|1|WA|G|4269

Current chains

Chain WA

28S rRNA

Nearby chains

Chain D

uL18

Chain J

uL5

Chain S

eL21

Chain XA

5S ribosomal RNA; 5S rRNA