IL_8VVU_145

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_145 not in the Motif Atlas

Geometric match to IL_8P9A_340

Geometric discrepancy: 0.1583

The information below is about IL_8P9A_340

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8VVU|1|WA|G|4497
8VVU|1|WA|A|4498
8VVU|1|WA|U|4499
*
8VVU|1|WA|A|4505
8VVU|1|WA|C|4506
8VVU|1|WA|C|4507

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23