IL_8VVU_160

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_160 not in the Motif Atlas

Geometric match to IL_5J7L_391

Geometric discrepancy: 0.2266

The information below is about IL_5J7L_391

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8VVU|1|WA|C|4769
8VVU|1|WA|G|4770
8VVU|1|WA|G|4771
*
8VVU|1|WA|C|4868
8VVU|1|WA|G|4869

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain L

eL14

Chain N

uL13

Chain R

L18A