IL_8VVU_168

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8VVU|1|WA|G|5051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_168 not in the Motif Atlas

Geometric match to IL_8P9A_359

Geometric discrepancy: 0.1817

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8VVU|1|WA|G|5002
8VVU|1|WA|U|5003
8VVU|1|WA|U|5004
*
8VVU|1|WA|G|5047
8VVU|1|WA|U|5048
8VVU|1|WA|C|5049
8VVU|1|WA|A|5050
8VVU|1|WA|G|5051
8VVU|1|WA|C|5052

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

L31