IL_8VVU_179
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 8VVU|1|YA|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_179 not in the Motif Atlas
- Geometric match to IL_7ELQ_002
- Geometric discrepancy: 0.1669
- The information below is about IL_7ELQ_002
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8VVU|1|YA|U|64
8VVU|1|YA|A|65
8VVU|1|YA|A|66
*
8VVU|1|YA|U|92
8VVU|1|YA|C|93
8VVU|1|YA|G|94
8VVU|1|YA|A|95
Current chains
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain GA
- L35
- Chain IA
- L37
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- L26
Coloring options: