IL_8VVU_184

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_184 not in the Motif Atlas

Geometric match to IL_8CRE_394

Geometric discrepancy: 0.1408

The information below is about IL_8CRE_394

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8VVU|1|ZA|C|49
8VVU|1|ZA|A|50
8VVU|1|ZA|U|51
*
8VVU|1|ZA|A|476
8VVU|1|ZA|G|477

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain YB

S24