IL_8VVU_189

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VVU|1|ZA|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_189 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.2268

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8VVU|1|ZA|G|145
8VVU|1|ZA|G|146
8VVU|1|ZA|A|147
8VVU|1|ZA|U|148
8VVU|1|ZA|A|149
8VVU|1|ZA|A|150
8VVU|1|ZA|C|151
*
8VVU|1|ZA|G|167
8VVU|1|ZA|C|168
8VVU|1|ZA|U|169
8VVU|1|ZA|A|170
8VVU|1|ZA|A|171
8VVU|1|ZA|U|172
8VVU|1|ZA|A|173
8VVU|1|ZA|C|174

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain V

uL24

Chain YB

S24