IL_8VVU_195

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

8VVU|1|ZA|U|361, 8VVU|1|ZA|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_195 not in the Motif Atlas

Geometric match to IL_8CRE_408

Geometric discrepancy: 0.1136

The information below is about IL_8CRE_408

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8VVU|1|ZA|U|359
8VVU|1|ZA|A|360
8VVU|1|ZA|U|361
8VVU|1|ZA|C|362
8VVU|1|ZA|A|363
8VVU|1|ZA|A|364
*
8VVU|1|ZA|U|396
8VVU|1|ZA|G|397
8VVU|1|ZA|A|398
8VVU|1|ZA|C|399
8VVU|1|ZA|C|400
8VVU|1|ZA|A|401
8VVU|1|ZA|C|402
8VVU|1|ZA|G|403

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain IB

S8

Chain LB

S11

Chain XB

S23