IL_8VVU_197

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8VVU|1|ZA|U|428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_197 not in the Motif Atlas

Geometric match to IL_8CRE_410

Geometric discrepancy: 0.1272

The information below is about IL_8CRE_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VVU|1|ZA|G|411
8VVU|1|ZA|G|412
8VVU|1|ZA|G|413
*
8VVU|1|ZA|C|424
8VVU|1|ZA|G|425
8VVU|1|ZA|A|426
8VVU|1|ZA|U|427
8VVU|1|ZA|U|428
8VVU|1|ZA|C|429

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain XB

S23