IL_8VVU_205

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_205 not in the Motif Atlas

Geometric match to IL_8P9A_269

Geometric discrepancy: 0.2602

The information below is about IL_8P9A_269

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8VVU|1|ZA|U|566
8VVU|1|ZA|C|567
8VVU|1|ZA|C|568
8VVU|1|ZA|A|569
*
8VVU|1|ZA|U|581
8VVU|1|ZA|U|582
8VVU|1|ZA|A|583
8VVU|1|ZA|A|584

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain YB

S24