IL_8VVU_209

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8VVU|1|ZA|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_209 not in the Motif Atlas

Geometric match to IL_8P9A_405

Geometric discrepancy: 0.2325

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8VVU|1|ZA|G|665
8VVU|1|ZA|U|666
8VVU|1|ZA|U|667
8VVU|1|ZA|A|668
8VVU|1|ZA|A|669
8VVU|1|ZA|A|670
8VVU|1|ZA|A|671
*
8VVU|1|ZA|U|1161
8VVU|1|ZA|C|1162

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain XB

S23