IL_8VVU_215

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_215 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1303

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8VVU|1|ZA|U|805
8VVU|1|ZA|U|806
8VVU|1|ZA|G|807
*
8VVU|1|ZA|C|856
8VVU|1|ZA|U|857
8VVU|1|ZA|A|858

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain LB

S11

Chain WB

S15A