IL_8VVU_223

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8VVU|1|ZA|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_223 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.2856

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8VVU|1|ZA|G|952
8VVU|1|ZA|C|953
8VVU|1|ZA|U|954
8VVU|1|ZA|A|955
8VVU|1|ZA|G|956
*
8VVU|1|ZA|C|967
8VVU|1|ZA|U|968
8VVU|1|ZA|U|969
8VVU|1|ZA|G|970
8VVU|1|ZA|G|971
8VVU|1|ZA|A|972
8VVU|1|ZA|C|973
8VVU|1|ZA|C|974

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BB

S3A

Chain OB

S14

Chain WA

Large subunit ribosomal RNA; LSU rRNA