IL_8VVU_227

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_227 not in the Motif Atlas

Geometric match to IL_8CRE_440

Geometric discrepancy: 0.1407

The information below is about IL_8CRE_440

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VVU|1|ZA|C|1098
8VVU|1|ZA|G|1099
8VVU|1|ZA|A|1100
8VVU|1|ZA|U|1101
*
8VVU|1|ZA|G|1131
8VVU|1|ZA|C|1132
8VVU|1|ZA|A|1133
8VVU|1|ZA|G|1134

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain AC

S26

Chain BB

S3A

Chain NB

uS15

Chain RB

eS17