IL_8VVU_230

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_230 not in the Motif Atlas

Geometric match to IL_8CRE_442

Geometric discrepancy: 0.0906

The information below is about IL_8CRE_442

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8VVU|1|ZA|G|1168
8VVU|1|ZA|G|1169
8VVU|1|ZA|A|1170
8VVU|1|ZA|G|1171
8VVU|1|ZA|U|1172
8VVU|1|ZA|A|1173
8VVU|1|ZA|U|1174
8VVU|1|ZA|G|1175
*
8VVU|1|ZA|U|1186
8VVU|1|ZA|G|1187
8VVU|1|ZA|A|1188
8VVU|1|ZA|A|1189
8VVU|1|ZA|A|1190
8VVU|1|ZA|C|1191

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain XB

S23