IL_8VVU_248

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_248 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.1161

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8VVU|1|ZA|A|1537
8VVU|1|ZA|C|1538
8VVU|1|ZA|U|1539
*
8VVU|1|ZA|A|1594
8VVU|1|ZA|U|1595
8VVU|1|ZA|U|1596

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain FB

S5

Chain QB

uS9

Chain SB

S18

Chain TB

S19

Chain ZB

eS25