IL_8VVU_258

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_258 not in the Motif Atlas

Geometric match to IL_8CRE_471

Geometric discrepancy: 0.1691

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8VVU|1|ZA|C|1717
8VVU|1|ZA|G|1718
8VVU|1|ZA|A|1719
8VVU|1|ZA|U|1720
*
8VVU|1|ZA|A|1813
8VVU|1|ZA|G|1814
8VVU|1|ZA|A|1815
8VVU|1|ZA|G|1816

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain U

L23

Chain WA

Large subunit ribosomal RNA; LSU rRNA