IL_8VVV_009

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

8VVV|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_009 not in the Motif Atlas

Geometric match to IL_8CRE_007

Geometric discrepancy: 0.1481

The information below is about IL_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8VVV|1|5|A|121
8VVV|1|5|U|122
*
8VVV|1|5|A|147
8VVV|1|5|A|148
8VVV|1|5|A|149
8VVV|1|5|U|150
8VVV|1|5|G|151
8VVV|1|5|U|152

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

eL8

Chain N

eL15