IL_8VVV_015

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8VVV|1|5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_015 not in the Motif Atlas

Geometric match to IL_9DFE_073

Geometric discrepancy: 0.281

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8VVV|1|5|C|339
8VVV|1|5|C|340
8VVV|1|5|G|341
8VVV|1|5|G|342
*
8VVV|1|8|C|32
8VVV|1|8|G|33

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

eL15

Chain j

eL37