IL_8VVV_026

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8VVV|1|5|G|667, 8VVV|1|5|A|668, 8VVV|1|5|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_026 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.2086

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8VVV|1|5|G|488
8VVV|1|5|G|489
*
8VVV|1|5|C|666
8VVV|1|5|G|667
8VVV|1|5|A|668
8VVV|1|5|C|669
8VVV|1|5|C|670

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Q

eL18

Chain r

eL28