IL_8VVV_038
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8VVV|1|5|G|750, 8VVV|1|5|U|916, 8VVV|1|5|C|918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_038 not in the Motif Atlas
- Geometric match to IL_8CRE_022
- Geometric discrepancy: 0.3194
- The information below is about IL_8CRE_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43858.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|5|G|747
8VVV|1|5|A|748
8VVV|1|5|A|749
8VVV|1|5|G|750
8VVV|1|5|G|751
8VVV|1|5|U|752
8VVV|1|5|G|753
8VVV|1|5|G|754
*
8VVV|1|5|U|913
8VVV|1|5|G|914
8VVV|1|5|U|915
8VVV|1|5|U|916
8VVV|1|5|A|917
8VVV|1|5|C|918
8VVV|1|5|A|919
8VVV|1|5|G|920
8VVV|1|5|C|921
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain M
- eL14
- Chain S
- eL20
Coloring options: