IL_8VVV_039

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_039 not in the Motif Atlas

Geometric match to IL_8K85_007

Geometric discrepancy: 0.1761

The information below is about IL_8K85_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVV|1|5|G|1080
8VVV|1|5|G|1081
8VVV|1|5|C|1082
*
8VVV|1|5|G|1240
8VVV|1|5|G|1241
8VVV|1|5|C|1242

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain E

L6

Chain F

uL30

Chain b

eL29