IL_8VVV_047

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*G(JMH)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_047 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3347

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8VVV|1|5|G|1431
8VVV|1|5|G|1432
8VVV|1|5|A|1433
8VVV|1|5|U|1434
8VVV|1|5|C|1435
*
8VVV|1|5|G|1461
8VVV|1|5|JMH|1462
8VVV|1|5|G|1463
8VVV|1|5|C|1464
8VVV|1|5|A|1465
8VVV|1|5|C|1466

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain b

eL29