IL_8VVV_062
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUAA*UAAAU(E7G)
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: E7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_062 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.2154
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|5|C|1738
8VVV|1|5|G|1739
8VVV|1|5|G|1740
8VVV|1|5|U|1741
8VVV|1|5|A|1742
8VVV|1|5|A|1743
*
8VVV|1|5|U|1798
8VVV|1|5|A|1799
8VVV|1|5|A|1800
8VVV|1|5|A|1801
8VVV|1|5|U|1802
8VVV|1|5|E7G|1803
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- L10
- Chain S
- eL20
- Chain T
- eL21
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