IL_8VVV_072
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_072 not in the Motif Atlas
- Geometric match to IL_9DFE_036
- Geometric discrepancy: 0.1477
- The information below is about IL_9DFE_036
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8VVV|1|5|C|1917
8VVV|1|5|G|1918
8VVV|1|5|C|1919
8VVV|1|5|C|1920
8VVV|1|5|C|1921
8VVV|1|5|G|1922
8VVV|1|5|A|1923
8VVV|1|5|U|1924
*
8VVV|1|5|G|2070
8VVV|1|5|G|2071
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain O
- uL13
- Chain S
- eL20
- Chain f
- eL33
Coloring options: