IL_8VVV_076
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 8VVV|1|5|C|1941, 8VVV|1|5|A|2047, 8VVV|1|5|U|2050, 8VVV|1|5|G|2051
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_076 not in the Motif Atlas
- Geometric match to IL_8P9A_280
- Geometric discrepancy: 0.1921
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VVV|1|5|G|1939
8VVV|1|5|A|1940
8VVV|1|5|C|1941
8VVV|1|5|C|1942
8VVV|1|5|C|1943
8VVV|1|5|C|1944
8VVV|1|5|A|1945
8VVV|1|5|G|1946
8VVV|1|5|A|1947
8VVV|1|5|A|1948
8VVV|1|5|A|1949
8VVV|1|5|A|1950
*
8VVV|1|5|U|2044
8VVV|1|5|G|2045
8VVV|1|5|A|2046
8VVV|1|5|A|2047
8VVV|1|5|A|2048
8VVV|1|5|A|2049
8VVV|1|5|U|2050
8VVV|1|5|G|2051
8VVV|1|5|G|2052
8VVV|1|5|A|2053
8VVV|1|5|U|2054
8VVV|1|5|G|2055
8VVV|1|5|OMG|2056
8VVV|1|5|C|2057
8VVV|1|5|G|2058
8VVV|1|5|C|2059
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- uL3
- Chain I
- L10
- Chain O
- uL13
- Chain f
- eL33
- Chain m
- eL40
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