IL_8VVV_078

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8VVV|1|5|A|1966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_078 not in the Motif Atlas

Geometric match to IL_8CRE_057

Geometric discrepancy: 0.1924

The information below is about IL_8CRE_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VVV|1|5|U|1963
8VVV|1|5|A|1964
8VVV|1|5|U|1965
8VVV|1|5|A|1966
8VVV|1|5|G|1967
8VVV|1|5|A|1968
8VVV|1|5|C|1969
8VVV|1|5|A|1970
8VVV|1|5|G|1971
*
8VVV|1|5|C|2028
8VVV|1|5|C|2029
8VVV|1|5|G|2030
8VVV|1|5|A|2031
8VVV|1|5|A|2032

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

eL40

Chain s

uL10