IL_8VVV_080

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8VVV|1|5|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_080 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2024

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVV|1|5|G|2007
8VVV|1|5|A|2008
8VVV|1|5|G|2009
8VVV|1|5|U|2010
8VVV|1|5|G|2011
*
8VVV|1|5|C|2020
8VVV|1|5|U|2021
8VVV|1|5|C|2022

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

eL11