IL_8VVV_084
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8VVV|1|5|U|2311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_084 not in the Motif Atlas
- Geometric match to IL_5J7L_288
- Geometric discrepancy: 0.1564
- The information below is about IL_5J7L_288
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8VVV|1|5|C|2308
8VVV|1|5|C|2309
8VVV|1|5|U|2310
8VVV|1|5|U|2311
8VVV|1|5|G|2312
8VVV|1|5|A|2313
8VVV|1|5|A|2314
8VVV|1|5|G|2315
*
8VVV|1|5|U|2335
8VVV|1|5|G|2336
8VVV|1|5|G|2337
8VVV|1|5|A|2338
8VVV|1|5|G|2339
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain Y
- L26
- Chain e
- eL32
Coloring options: