IL_8VVV_087

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8VVV|1|5|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_087 not in the Motif Atlas

Geometric match to IL_4MGN_001

Geometric discrepancy: 0.2554

The information below is about IL_4MGN_001

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8VVV|1|5|U|2421
8VVV|1|5|G|2422
8VVV|1|5|A|2423
8VVV|1|5|A|2424
8VVV|1|5|C|2425
*
8VVV|1|5|G|2433
8VVV|1|5|A|2434
8VVV|1|5|A|2435

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39