IL_8VVV_088
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8VVV|1|5|A|2518, 8VVV|1|5|A|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_088 not in the Motif Atlas
- Geometric match to IL_8CRE_067
- Geometric discrepancy: 0.1271
- The information below is about IL_8CRE_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8VVV|1|5|C|2452
8VVV|1|5|U|2453
8VVV|1|5|G|2454
8VVV|1|5|A|2455
8VVV|1|5|G|2456
*
8VVV|1|5|C|2515
8VVV|1|5|G|2516
8VVV|1|5|A|2517
8VVV|1|5|A|2518
8VVV|1|5|A|2519
8VVV|1|5|G|2520
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain g
- eL34
- Chain j
- eL37
- Chain l
- eL39
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