IL_8VVV_099

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_099 not in the Motif Atlas

Geometric match to IL_8CRE_079

Geometric discrepancy: 0.1217

The information below is about IL_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8VVV|1|5|A|2838
8VVV|1|5|A|2839
8VVV|1|5|C|2840
8VVV|1|5|A|2841
8VVV|1|5|A|2842
8VVV|1|5|U|2843
8VVV|1|5|G|2844
*
8VVV|1|5|C|3856
8VVV|1|5|U|3857
8VVV|1|5|A|3858
8VVV|1|5|U|3859

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31