IL_8VVV_101

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_101 not in the Motif Atlas

Geometric match to IL_8P9A_304

Geometric discrepancy: 0.133

The information below is about IL_8P9A_304

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8VVV|1|5|G|2853
8VVV|1|5|G|2854
8VVV|1|5|A|2855
8VVV|1|5|A|2856
*
8VVV|1|5|U|3846
8VVV|1|5|C|3847

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

L23